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Molecular Data Chatbot

Project type

Agentic AI

Date

May 2025

Designed and implemented the technical architecture for an Agentic AI system using Vertex AI ADK to enable bidirectional reasoning between molecular structure and adverse event risk. Developed a hybrid similarity model combining vector-space embeddings, Tanimoto fingerprint similarity, and regression logic to map SMILES inputs to AE risk and identify low-risk molecular analogs. Integrated large-scale biomedical datasets (ChEMBL, PubChem, FAERS) via API orchestration and web scraping, using RDKit, BigQuery, and Pandas to compute molecular descriptors and generate fingerprints. Deployed a cloud-native backend with Google Cloud Functions and GCS for real-time molecular inference, exposing a public HTTP API for seamless integration into full-stack pharmacovigilance applications.

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